I would avoid the pro comp heads at all costs. They have a bad rep.
With the TFS heads, you may need to have the pistons notched for the valves if you run much over 0.5 lift for PV clearance. The TFS valves will have difference recess positions than stock valves due to the different valve train geometry. Im pretty sure you can get TFS specific pistons if you felt like it. They are a pretty good choice though, I have been running them as cast for about 3 years. I would keep the CC on the lower side of that range, depending on the cam.
What are your hp goals?
If the car runs a MAF, the MAF will take care of a lot of the retuning work for you as it measures the mass of the air moving through it and re-adjusts to compensate. Might just need to make sure the O2 sensor is ok and injectors are up to the task (may need an upgrade if you push too far past 300hp)
Going from EFI to carb is probably a personal preference thing depending on how you use it, and your comfort level in tuning with one or the other.
As for intake - it really depends on your HP goals. Parker funnelwebs are usually for high rpm motors. If you wont see the high side of 5700 on a regular basis I would go for a weiand stealth. If you do go for high RPM's you will need to put in ARP rod bolts as the rod bolts are the weakest link in a 5.0.